PETSc for Partial Differential Equations: Numerical Solutions in C and Python

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isbn: 9781611976311
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PETSc for Partial Differential Equations: Numerical Solutions in C and Python

PETSc for Partial Differential Equations Numerical Solutions in C and Python.jpg

Author(s): Ed Bueler

Ed Bueler

University of Alaska Fairbanks, Fairbanks, Alaska, USA

https://doi.org/10.1137/1.9781611976311

Permalink: https://doi.org/10.1137/1.9781611976311

Keywords: Partial differential equationsScientific computingPreconditioningSupercomputingSupercomputersNumerical analysis

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The Portable, Extensible Toolkit for Scientific Computation (PETSc) is an open-source library of advanced data structures and methods for solving linear and nonlinear equations and for managing discretizations. This book uses these modern numerical tools to demonstrate how to solve nonlinear partial differential equations (PDEs) in parallel. It starts from key mathematical concepts, such as Krylov space methods, preconditioning, multigrid, and Newton's method. In PETSc these components are composed at run time into fast solvers.

Discretizations are introduced from the beginning, with an emphasis on finite difference and finite element methodologies. The example C programs of the first 12 chapters, listed on the inside front cover, solve (mostly) elliptic and parabolic PDE problems. Discretization leads to large, sparse, and generally nonlinear systems of algebraic equations. For such problems, mathematical solver concepts are explained and illustrated through the examples, with sufficient context to speed further development.

PETSc for Partial Differential Equations

  • addresses both discretization and fast solvers for PDEs;

  • emphasizes practice more than theory;

  • contains well-structured examples, with advice on run-time solver choices;

  • demonstrates how to achieve high performance and parallel scalability; and

  • builds on the reader's understanding of fast solver concepts when applying the Firedrake

Python finite element solver library in the last two chapters.

This textbook, the first to cover PETSc programming for nonlinear PDEs, provides an on-ramp for graduate students and researchers to a major area of high-performance computing for science and engineering. It is suitable as a supplement for courses in scientific computing or numerical methods for differential equations.

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Front Matter

pp. i-xv (15 pages)

https://doi.org/10.1137/1.9781611976311.fm

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Chapter 1: Getting started with PETSc

pp. 1-8 (8 pages)

https://doi.org/10.1137/1.9781611976311.ch1

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Chapter 2: Finite-dimensional linear systems

pp. 9-41 (33 pages)

https://doi.org/10.1137/1.9781611976311.ch2

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Chapter 3: Poisson equation on a structured grid

pp. 43-66 (24 pages)

https://doi.org/10.1137/1.9781611976311.ch3

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Chapter 4: Nonlinear equations by Newton's method

pp. 67-93 (27 pages)

https://doi.org/10.1137/1.9781611976311.ch4

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Chapter 5: Time-stepping

pp. 95-128 (34 pages)

https://doi.org/10.1137/1.9781611976311.ch5

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Chapter 6: Preconditioners for PDEs

pp. 129-174 (46 pages)

https://doi.org/10.1137/1.9781611976311.ch6

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Chapter 7: Optimal solvers for elliptic PDEs

pp. 175-197 (23 pages)

https://doi.org/10.1137/1.9781611976311.ch7

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Chapter 8: Parallel scaling

pp. 199-216 (18 pages)

https://doi.org/10.1137/1.9781611976311.ch8

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Chapter 9: Finite element method I: Nonlinear optimization

pp. 217-241 (25 pages)

https://doi.org/10.1137/1.9781611976311.ch9

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Chapter 10: Finite element method II: Naive and unstructured

pp. 243-277 (35 pages)

https://doi.org/10.1137/1.9781611976311.ch10

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Chapter 11: Advection without, and then with, diffusion

pp. 279-313 (35 pages)

https://doi.org/10.1137/1.9781611976311.ch11

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Chapter 12: Inequality constraints

pp. 315-330 (16 pages)

https://doi.org/10.1137/1.9781611976311.ch12

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Chapter 13: Finite element method III: Firedrake and DMPlex

pp. 331-341 (11 pages)

https://doi.org/10.1137/1.9781611976311.ch13

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Chapter 14: Stokes equations (with Firedrake)

pp. 343-370 (28 pages)

https://doi.org/10.1137/1.9781611976311.ch14

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Appendix: Some numerical facts of life

pp. 371-372 (2 pages)

https://doi.org/10.1137/1.9781611976311.appa

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Back Matter

pp. 373-391 (21 pages)

https://doi.org/10.1137/1.9781611976311.bm

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